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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.21

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-06-10, 20:52 PDT based on data in: /hb/groups/kelley_lab/tina/mytilus/04_methylation_extractor/final_minscore0.6

        General Statistics

        Showing 87/87 rows and 4/4 columns.
        Sample Name% mCpG% mCHG% mCHHM C's
        12O-F_S66_R1_merged
        12.1%
        1.3%
        1.1%
        5.6
        12O-G_S22_R1_merged
        9.8%
        0.7%
        0.5%
        4.0
        14B-F_S71_R1_merged
        9.8%
        1.3%
        1.2%
        0.7
        14B-G_S25_R1_merged
        12.0%
        0.8%
        0.5%
        8.6
        15G-F_S52_R1_merged
        10.1%
        0.9%
        0.7%
        10.6
        15G-G_S24_R1_merged
        10.5%
        0.7%
        0.6%
        3.2
        15W-G_S12_R1_merged
        11.4%
        1.0%
        0.9%
        0.5
        160-G_S11_R1_merged
        11.2%
        0.9%
        0.8%
        1.4
        16O-G_S62_R1_merged
        13.1%
        0.8%
        0.6%
        3.7
        18W-F_S81_R1_merged
        12.7%
        1.5%
        1.6%
        0.1
        18W-G_S41_R1_merged
        14.9%
        2.0%
        2.1%
        2.3
        20G-F_S2_R1_merged
        11.4%
        0.7%
        0.5%
        4.1
        20G-G_S29_R1_merged
        9.7%
        0.7%
        0.5%
        8.4
        21B-F_S54_R1_merged
        12.3%
        0.9%
        0.7%
        1.8
        21B-G_S7_R1_merged
        9.6%
        0.7%
        0.5%
        15.2
        28W-F_S45_R1_merged
        9.5%
        0.9%
        0.7%
        1.3
        28W-G_S47_R1_merged
        9.8%
        1.0%
        0.9%
        1.1
        29W-G_S76_R1_merged
        11.3%
        0.7%
        0.5%
        4.8
        29Y-F_S74_R1_merged
        10.1%
        0.7%
        0.4%
        3.6
        29Y-G_S68_R1_merged
        8.8%
        0.7%
        0.5%
        3.0
        2B-F_S72_R1_merged
        10.9%
        0.9%
        0.6%
        2.2
        2B-G_S17_R1_merged
        11.1%
        0.7%
        0.5%
        9.1
        33G-F_S23_R1_merged
        12.6%
        1.3%
        1.3%
        0.5
        38B-F_S42_R1_merged
        11.6%
        1.3%
        1.2%
        1.4
        38B-G_S78_R1_merged
        8.9%
        1.1%
        0.8%
        0.4
        40Y-F_S84_R1_merged
        9.4%
        0.8%
        0.6%
        5.4
        40Y-G_S63_R1_merged
        7.3%
        0.6%
        0.4%
        5.6
        45G-F_S32_R1_merged
        11.0%
        0.7%
        0.4%
        13.4
        45G-G_S69_R1_merged
        11.8%
        0.9%
        0.6%
        3.0
        47W-F_S82_R1_merged
        12.3%
        0.9%
        0.7%
        2.6
        47W-G_S80_R1_merged
        12.6%
        0.9%
        0.6%
        6.3
        50B-G_S83_R1_merged
        11.1%
        0.8%
        0.6%
        10.2
        50G-F_S13_R1_merged
        11.3%
        0.8%
        0.6%
        4.0
        50G-G_S33_R1_merged
        10.2%
        0.7%
        0.5%
        6.9
        51B-G_S18_R1_merged
        11.2%
        0.7%
        0.5%
        9.0
        55B-F_S4_R1_merged
        11.0%
        0.8%
        0.6%
        4.2
        55B-G_S40_R1_merged
        11.3%
        0.8%
        0.5%
        7.9
        55Y-F_S61_R1_merged
        8.5%
        0.7%
        0.5%
        2.8
        55Y-G_S10_R1_merged
        9.3%
        0.6%
        0.4%
        3.1
        56Y-G_S53_R1_merged
        9.8%
        0.7%
        0.4%
        5.3
        60G-F_S65_R1_merged
        9.8%
        0.6%
        0.4%
        12.9
        60G-G_S58_R1_merged
        15.2%
        1.7%
        1.5%
        1.4
        61W-F_S38_R1_merged
        12.2%
        1.1%
        0.9%
        2.0
        61W-G_S5_R1_merged
        12.2%
        1.1%
        0.9%
        1.8
        62W-F_S49_R1_merged
        13.6%
        1.5%
        1.4%
        1.3
        63G-F_S27_R1_merged
        12.3%
        1.4%
        1.3%
        0.6
        63G-G_S35_R1_merged
        12.6%
        0.9%
        0.6%
        5.3
        67B-F_S20_R1_merged
        10.5%
        0.8%
        0.6%
        3.7
        67B-G_S8_R1_merged
        11.4%
        0.7%
        0.5%
        17.7
        67W-F_S34_R1_merged
        12.5%
        1.1%
        0.9%
        0.5
        67W-G_S86_R1_merged
        10.9%
        0.7%
        0.4%
        9.5
        6O-F_S6_R1_merged
        12.8%
        0.7%
        0.5%
        2.9
        6W-F_S50_R1_merged
        9.8%
        0.7%
        0.5%
        9.6
        6W-G_S15_R1_merged
        10.2%
        0.8%
        0.7%
        2.1
        72Y-F_S28_R1_merged
        10.8%
        0.8%
        0.6%
        7.9
        75Y-G_S9_R1_merged
        14.2%
        1.0%
        0.8%
        4.6
        76Y-F_S46_R1_merged
        9.0%
        0.8%
        0.6%
        3.5
        76Y-G_S85_R1_merged
        9.6%
        0.7%
        0.5%
        4.1
        81G-F_S79_R1_merged
        9.9%
        0.7%
        0.5%
        2.5
        86G-F_S75_R1_merged
        10.6%
        0.7%
        0.4%
        19.3
        89Y-F_S31_R1_merged
        10.7%
        0.8%
        0.6%
        9.9
        90W-F_S21_R1_merged
        10.1%
        0.7%
        0.5%
        4.2
        90W-G_S67_R1_merged
        11.2%
        0.8%
        0.6%
        2.4
        91W-F_S30_R1_merged
        10.2%
        1.0%
        0.8%
        20.8
        91W-G_S1_R1_merged
        11.5%
        0.9%
        0.7%
        1.9
        9W-F_S43_R1_merged
        12.7%
        1.0%
        0.8%
        1.1
        9W-G_S48_R1_merged
        13.2%
        1.2%
        1.0%
        2.0
        EL3-G_S44_R1_merged
        11.8%
        0.9%
        0.7%
        3.6
        ELB1-F_S70_R1_merged
        12.3%
        1.4%
        1.4%
        0.4
        ELB1-G_S56_R1_merged
        10.5%
        0.9%
        0.7%
        3.7
        ELB14-G_S37_R1_merged
        10.4%
        0.9%
        0.8%
        3.8
        ELB2-G_S59_R1_merged
        11.9%
        0.8%
        0.7%
        2.9
        ELB4-F_S14_R1_merged
        10.5%
        1.2%
        0.9%
        17.1
        ELB6-F_S51_R1_merged
        12.9%
        1.0%
        0.8%
        4.6
        ELB6-G_S60_R1_merged
        12.3%
        0.9%
        0.7%
        1.5
        ELB9-G_S73_R1_merged
        10.3%
        0.7%
        0.5%
        13.8
        PLB1-G_S77_R1_merged
        11.4%
        1.0%
        0.8%
        3.6
        PLB14-G_S16_R1_merged
        13.6%
        1.3%
        1.1%
        0.8
        PLB15-F_S26_R1_merged
        11.8%
        0.7%
        0.5%
        4.8
        PLB15-G_S3_R1_merged
        10.4%
        0.7%
        0.5%
        10.4
        PLB2-F_S19_R1_merged
        11.0%
        0.9%
        0.6%
        9.4
        PLB2-G_S39_R1_merged
        11.4%
        0.8%
        0.6%
        4.8
        PLB4-F_S57_R1_merged
        9.1%
        0.6%
        0.4%
        20.9
        PLB4-G_S36_R1_merged
        9.9%
        0.9%
        0.7%
        3.8
        PLB6-G_S87_R1_merged
        12.3%
        0.9%
        0.6%
        0.3
        PLB7-F_S64_R1_merged
        11.4%
        0.8%
        0.6%
        18.6
        PLB7-G_S55_R1_merged
        9.8%
        0.9%
        0.7%
        3.1

        Bismark

        Version: 0.24.2

        Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.DOI: 10.1093/bioinformatics/btr167.

        Cytosine Methylation

        Created with MultiQC

        M-Bias

        This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.

        Created with MultiQC

        Software Versions

        Software Versions lists versions of software tools extracted from file contents.

        SoftwareVersion
        Bismark0.24.2

        MultiQC v1.21 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.