A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2024-06-10, 20:52 PDT
based on data in:
/hb/groups/kelley_lab/tina/mytilus/04_methylation_extractor/final_minscore0.6
General Statistics
| Sample Name | % mCpG | % mCHG | % mCHH | M C's |
|---|---|---|---|---|
| 12O-F_S66_R1_merged | 12.1% | 1.3% | 1.1% | 5.6 |
| 12O-G_S22_R1_merged | 9.8% | 0.7% | 0.5% | 4.0 |
| 14B-F_S71_R1_merged | 9.8% | 1.3% | 1.2% | 0.7 |
| 14B-G_S25_R1_merged | 12.0% | 0.8% | 0.5% | 8.6 |
| 15G-F_S52_R1_merged | 10.1% | 0.9% | 0.7% | 10.6 |
| 15G-G_S24_R1_merged | 10.5% | 0.7% | 0.6% | 3.2 |
| 15W-G_S12_R1_merged | 11.4% | 1.0% | 0.9% | 0.5 |
| 160-G_S11_R1_merged | 11.2% | 0.9% | 0.8% | 1.4 |
| 16O-G_S62_R1_merged | 13.1% | 0.8% | 0.6% | 3.7 |
| 18W-F_S81_R1_merged | 12.7% | 1.5% | 1.6% | 0.1 |
| 18W-G_S41_R1_merged | 14.9% | 2.0% | 2.1% | 2.3 |
| 20G-F_S2_R1_merged | 11.4% | 0.7% | 0.5% | 4.1 |
| 20G-G_S29_R1_merged | 9.7% | 0.7% | 0.5% | 8.4 |
| 21B-F_S54_R1_merged | 12.3% | 0.9% | 0.7% | 1.8 |
| 21B-G_S7_R1_merged | 9.6% | 0.7% | 0.5% | 15.2 |
| 28W-F_S45_R1_merged | 9.5% | 0.9% | 0.7% | 1.3 |
| 28W-G_S47_R1_merged | 9.8% | 1.0% | 0.9% | 1.1 |
| 29W-G_S76_R1_merged | 11.3% | 0.7% | 0.5% | 4.8 |
| 29Y-F_S74_R1_merged | 10.1% | 0.7% | 0.4% | 3.6 |
| 29Y-G_S68_R1_merged | 8.8% | 0.7% | 0.5% | 3.0 |
| 2B-F_S72_R1_merged | 10.9% | 0.9% | 0.6% | 2.2 |
| 2B-G_S17_R1_merged | 11.1% | 0.7% | 0.5% | 9.1 |
| 33G-F_S23_R1_merged | 12.6% | 1.3% | 1.3% | 0.5 |
| 38B-F_S42_R1_merged | 11.6% | 1.3% | 1.2% | 1.4 |
| 38B-G_S78_R1_merged | 8.9% | 1.1% | 0.8% | 0.4 |
| 40Y-F_S84_R1_merged | 9.4% | 0.8% | 0.6% | 5.4 |
| 40Y-G_S63_R1_merged | 7.3% | 0.6% | 0.4% | 5.6 |
| 45G-F_S32_R1_merged | 11.0% | 0.7% | 0.4% | 13.4 |
| 45G-G_S69_R1_merged | 11.8% | 0.9% | 0.6% | 3.0 |
| 47W-F_S82_R1_merged | 12.3% | 0.9% | 0.7% | 2.6 |
| 47W-G_S80_R1_merged | 12.6% | 0.9% | 0.6% | 6.3 |
| 50B-G_S83_R1_merged | 11.1% | 0.8% | 0.6% | 10.2 |
| 50G-F_S13_R1_merged | 11.3% | 0.8% | 0.6% | 4.0 |
| 50G-G_S33_R1_merged | 10.2% | 0.7% | 0.5% | 6.9 |
| 51B-G_S18_R1_merged | 11.2% | 0.7% | 0.5% | 9.0 |
| 55B-F_S4_R1_merged | 11.0% | 0.8% | 0.6% | 4.2 |
| 55B-G_S40_R1_merged | 11.3% | 0.8% | 0.5% | 7.9 |
| 55Y-F_S61_R1_merged | 8.5% | 0.7% | 0.5% | 2.8 |
| 55Y-G_S10_R1_merged | 9.3% | 0.6% | 0.4% | 3.1 |
| 56Y-G_S53_R1_merged | 9.8% | 0.7% | 0.4% | 5.3 |
| 60G-F_S65_R1_merged | 9.8% | 0.6% | 0.4% | 12.9 |
| 60G-G_S58_R1_merged | 15.2% | 1.7% | 1.5% | 1.4 |
| 61W-F_S38_R1_merged | 12.2% | 1.1% | 0.9% | 2.0 |
| 61W-G_S5_R1_merged | 12.2% | 1.1% | 0.9% | 1.8 |
| 62W-F_S49_R1_merged | 13.6% | 1.5% | 1.4% | 1.3 |
| 63G-F_S27_R1_merged | 12.3% | 1.4% | 1.3% | 0.6 |
| 63G-G_S35_R1_merged | 12.6% | 0.9% | 0.6% | 5.3 |
| 67B-F_S20_R1_merged | 10.5% | 0.8% | 0.6% | 3.7 |
| 67B-G_S8_R1_merged | 11.4% | 0.7% | 0.5% | 17.7 |
| 67W-F_S34_R1_merged | 12.5% | 1.1% | 0.9% | 0.5 |
| 67W-G_S86_R1_merged | 10.9% | 0.7% | 0.4% | 9.5 |
| 6O-F_S6_R1_merged | 12.8% | 0.7% | 0.5% | 2.9 |
| 6W-F_S50_R1_merged | 9.8% | 0.7% | 0.5% | 9.6 |
| 6W-G_S15_R1_merged | 10.2% | 0.8% | 0.7% | 2.1 |
| 72Y-F_S28_R1_merged | 10.8% | 0.8% | 0.6% | 7.9 |
| 75Y-G_S9_R1_merged | 14.2% | 1.0% | 0.8% | 4.6 |
| 76Y-F_S46_R1_merged | 9.0% | 0.8% | 0.6% | 3.5 |
| 76Y-G_S85_R1_merged | 9.6% | 0.7% | 0.5% | 4.1 |
| 81G-F_S79_R1_merged | 9.9% | 0.7% | 0.5% | 2.5 |
| 86G-F_S75_R1_merged | 10.6% | 0.7% | 0.4% | 19.3 |
| 89Y-F_S31_R1_merged | 10.7% | 0.8% | 0.6% | 9.9 |
| 90W-F_S21_R1_merged | 10.1% | 0.7% | 0.5% | 4.2 |
| 90W-G_S67_R1_merged | 11.2% | 0.8% | 0.6% | 2.4 |
| 91W-F_S30_R1_merged | 10.2% | 1.0% | 0.8% | 20.8 |
| 91W-G_S1_R1_merged | 11.5% | 0.9% | 0.7% | 1.9 |
| 9W-F_S43_R1_merged | 12.7% | 1.0% | 0.8% | 1.1 |
| 9W-G_S48_R1_merged | 13.2% | 1.2% | 1.0% | 2.0 |
| EL3-G_S44_R1_merged | 11.8% | 0.9% | 0.7% | 3.6 |
| ELB1-F_S70_R1_merged | 12.3% | 1.4% | 1.4% | 0.4 |
| ELB1-G_S56_R1_merged | 10.5% | 0.9% | 0.7% | 3.7 |
| ELB14-G_S37_R1_merged | 10.4% | 0.9% | 0.8% | 3.8 |
| ELB2-G_S59_R1_merged | 11.9% | 0.8% | 0.7% | 2.9 |
| ELB4-F_S14_R1_merged | 10.5% | 1.2% | 0.9% | 17.1 |
| ELB6-F_S51_R1_merged | 12.9% | 1.0% | 0.8% | 4.6 |
| ELB6-G_S60_R1_merged | 12.3% | 0.9% | 0.7% | 1.5 |
| ELB9-G_S73_R1_merged | 10.3% | 0.7% | 0.5% | 13.8 |
| PLB1-G_S77_R1_merged | 11.4% | 1.0% | 0.8% | 3.6 |
| PLB14-G_S16_R1_merged | 13.6% | 1.3% | 1.1% | 0.8 |
| PLB15-F_S26_R1_merged | 11.8% | 0.7% | 0.5% | 4.8 |
| PLB15-G_S3_R1_merged | 10.4% | 0.7% | 0.5% | 10.4 |
| PLB2-F_S19_R1_merged | 11.0% | 0.9% | 0.6% | 9.4 |
| PLB2-G_S39_R1_merged | 11.4% | 0.8% | 0.6% | 4.8 |
| PLB4-F_S57_R1_merged | 9.1% | 0.6% | 0.4% | 20.9 |
| PLB4-G_S36_R1_merged | 9.9% | 0.9% | 0.7% | 3.8 |
| PLB6-G_S87_R1_merged | 12.3% | 0.9% | 0.6% | 0.3 |
| PLB7-F_S64_R1_merged | 11.4% | 0.8% | 0.6% | 18.6 |
| PLB7-G_S55_R1_merged | 9.8% | 0.9% | 0.7% | 3.1 |
Bismark
0.24.2
Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.DOI: 10.1093/bioinformatics/btr167.
Cytosine Methylation
M-Bias
This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.
Software Versions
Software Versions lists versions of software tools extracted from file contents.
| Software | Version |
|---|---|
| Bismark | 0.24.2 |